Journal: BMC Microbiology

Article Title: Genome sequence of the potato pathogenic fungus Alternaria solani HWC-168 reveals clues for its conidiation and virulence

doi: 10.1186/s12866-018-1324-3

Figure Lengend Snippet: Summary of genome assembly and annotation features of A. solani , A. arborescens and A.brassicicola

Article Snippet: However, further comparison of GO terms between these three Alternaria isolates revealed that the number of genes from each GO category was similar between A. solani HWC-168, A. arborescens EGS 39–128 and A. brassicicola ATCC 96836.

Techniques:

Journal: BMC Microbiology

Article Title: Genome sequence of the potato pathogenic fungus Alternaria solani HWC-168 reveals clues for its conidiation and virulence

doi: 10.1186/s12866-018-1324-3

Figure Lengend Snippet: Distribution of intergenic distances of all predicted genes present in the genome of A. solani HWC-168 compared with A. arborescens EGS 39–128 and A. brassicicola ATCC 96836. Scatterplot representing 5′ and 3′ intergenic distances for all genes present in the genome. Red circles indicate the predicted genes

Article Snippet: However, further comparison of GO terms between these three Alternaria isolates revealed that the number of genes from each GO category was similar between A. solani HWC-168, A. arborescens EGS 39–128 and A. brassicicola ATCC 96836.

Techniques:

Journal: BMC Microbiology

Article Title: Genome sequence of the potato pathogenic fungus Alternaria solani HWC-168 reveals clues for its conidiation and virulence

doi: 10.1186/s12866-018-1324-3

Figure Lengend Snippet: Gene Ontology (GO) classification of genes predicted from the genome of A. solani HWC-168, A. arborescens EGS 39–128 and A. brassicicola ATCC 96836. Predicted genes are assigned to 24 categories in the GO classification. The x-axis legend shows a description of the 24 functional categories and the y-axis indicates the number of genes in a specific function cluster. Among the 24 categories, the cluster of ‘general function prediction’ has the highest number of genes, followed by amino acid transport and metabolism and carbohydrate transport and metabolism

Article Snippet: However, further comparison of GO terms between these three Alternaria isolates revealed that the number of genes from each GO category was similar between A. solani HWC-168, A. arborescens EGS 39–128 and A. brassicicola ATCC 96836.

Techniques: Functional Assay

Journal: BMC Microbiology

Article Title: Genome sequence of the potato pathogenic fungus Alternaria solani HWC-168 reveals clues for its conidiation and virulence

doi: 10.1186/s12866-018-1324-3

Figure Lengend Snippet: Gene Ontology (GO) classification of core and species-specific genes identified from comparison of A. solani HWC-168, A. arborescens EGS 39–128 and A. brassicicola ATCC 96836 genomes. Predicted core and species-specific genes are assigned to 24 categories in the GO classification. The x-axis legend shows a description of the 24 functional categories and the y-axis indicates the number of genes in a specific function cluster. Among the 24 categories, the cluster of ‘general function prediction’ contains the highest number of core and species-specific genes, followed by translation, ribosomal structure and biogenesis

Article Snippet: However, further comparison of GO terms between these three Alternaria isolates revealed that the number of genes from each GO category was similar between A. solani HWC-168, A. arborescens EGS 39–128 and A. brassicicola ATCC 96836.

Techniques: Comparison, Functional Assay